SCIP208 SCIP Report

Summary

SCIP208 SCIP Report

Predicted fetal genotype for the S allele: Inconclusive between Homozygous Wild Type and Heterozygous

SCIP208 SCIP Report

Report for the S allele

Summary Statistics

Mean Paternal Fraction: 1.4859646240300255

Median Paternal Fraction: 1.3804645062301262

IQR Paternal Fraction: 1.3804645062301262

Mean Fetal Fraction: 2.971929248060051

Median Fetal Fraction: 2.7609290124602524

IQR Fetal Fraction: 0.5945803786548041

Total Count: 3600

Alternative Count: 1777

Alternative Ratio: 0.4936111111111111

FL_SNPs Table

Chromosome Start End Num.reads A A_fraction G G_fraction C C_fraction T T_fraction ColMax PaternalFraction FetalFraction
chr5 17374828.0 17374829.0 2619.0 1.0 0.038183 2586.0 98.739977 4.0 0.152730 27.0 1.030928 98.739977 1.260023 2.520046
chr5 17374936.0 17374937.0 1522.0 0.0 0.000000 1504.0 98.817346 0.0 0.000000 18.0 1.182654 98.817346 1.182654 2.365309
chr5 17374951.0 17374952.0 1285.0 0.0 0.000000 1265.0 98.443580 0.0 0.000000 20.0 1.556420 98.443580 1.556420 3.112840
chr5 17374955.0 17374956.0 1205.0 0.0 0.000000 1189.0 98.672199 1.0 0.082988 15.0 1.244813 98.672199 1.327801 2.655602
chr5 17374971.0 17374972.0 1023.0 1009.0 98.631476 0.0 0.000000 0.0 0.000000 14.0 1.368524 98.631476 1.368524 2.737048
chr5 17374978.0 17374979.0 869.0 860.0 98.964327 0.0 0.000000 0.0 0.000000 9.0 1.035673 98.964327 1.035673 2.071346
chr5 17374979.0 17374980.0 833.0 822.0 98.679472 0.0 0.000000 1.0 0.120048 11.0 1.320528 98.679472 1.320528 2.641056
chr6 12059876.0 12059877.0 916.0 0.0 0.000000 900.0 98.253275 0.0 0.000000 16.0 1.746725 98.253275 1.746725 3.493450
chr6 12059880.0 12059881.0 840.0 829.0 98.690476 1.0 0.119048 0.0 0.000000 10.0 1.190476 98.690476 1.309524 2.619048
chr6 12059882.0 12059883.0 817.0 0.0 0.000000 804.0 98.408813 0.0 0.000000 13.0 1.591187 98.408813 1.591187 3.182375
chr6 12059898.0 12059899.0 731.0 721.0 98.632011 0.0 0.000000 1.0 0.136799 9.0 1.231190 98.632011 1.367989 2.735978
chr6 12059913.0 12059914.0 633.0 1.0 0.157978 621.0 98.104265 4.0 0.631912 7.0 1.105845 98.104265 1.895735 3.791469
chr6 12059917.0 12059918.0 546.0 537.0 98.351648 0.0 0.000000 3.0 0.549451 6.0 1.098901 98.351648 1.648352 3.296703
chr6 12059918.0 12059919.0 540.0 534.0 98.888889 0.0 0.000000 0.0 0.000000 6.0 1.111111 98.888889 1.111111 2.222222
chr6 12059921.0 12059922.0 529.0 519.0 98.109641 0.0 0.000000 0.0 0.000000 8.0 1.512287 98.109641 1.890359 3.780718
chr6 12059923.0 12059924.0 518.0 511.0 98.648649 0.0 0.000000 0.0 0.000000 7.0 1.351351 98.648649 1.351351 2.702703
chr6 12059925.0 12059926.0 515.0 509.0 98.834951 0.0 0.000000 0.0 0.000000 6.0 1.165049 98.834951 1.165049 2.330097
chr6 12059926.0 12059927.0 510.0 500.0 98.039216 0.0 0.000000 4.0 0.784314 6.0 1.176471 98.039216 1.960784 3.921569
chr6 12059934.0 12059935.0 392.0 0.0 0.000000 386.0 98.469388 1.0 0.255102 5.0 1.275510 98.469388 1.530612 3.061224
chr6 26509308.0 26509309.0 1006.0 991.0 98.508946 0.0 0.000000 3.0 0.298211 12.0 1.192843 98.508946 1.491054 2.982107
chr6 26509324.0 26509325.0 790.0 779.0 98.607595 0.0 0.000000 0.0 0.000000 11.0 1.392405 98.607595 1.392405 2.784810
chr6 26509326.0 26509327.0 788.0 0.0 0.000000 779.0 98.857868 1.0 0.126904 8.0 1.015228 98.857868 1.142132 2.284264
chr6 26509328.0 26509329.0 764.0 1.0 0.130890 14.0 1.832461 0.0 0.000000 749.0 98.036649 98.036649 1.963351 3.926702
chr6 26509338.0 26509339.0 604.0 596.0 98.675497 0.0 0.000000 1.0 0.165563 7.0 1.158940 98.675497 1.324503 2.649007
chr6 26509339.0 26509340.0 590.0 2.0 0.338983 6.0 1.016949 581.0 98.474576 1.0 0.169492 98.474576 1.525424 3.050847
chr6 26509340.0 26509341.0 584.0 0.0 0.000000 6.0 1.027397 577.0 98.801370 1.0 0.171233 98.801370 1.198630 2.397260
chr6 26509344.0 26509345.0 566.0 3.0 0.530035 6.0 1.060071 557.0 98.409894 0.0 0.000000 98.409894 1.590106 3.180212
chr6 26509346.0 26509347.0 530.0 521.0 98.301887 0.0 0.000000 2.0 0.377358 7.0 1.320755 98.301887 1.698113 3.396226
chr6 26509347.0 26509348.0 522.0 514.0 98.467433 0.0 0.000000 2.0 0.383142 6.0 1.149425 98.467433 1.532567 3.065134
chr6 26509363.0 26509364.0 439.0 427.0 97.266515 0.0 0.000000 1.0 0.227790 11.0 2.505695 97.266515 2.733485 5.466970
chr6 26509365.0 26509366.0 442.0 436.0 98.642534 0.0 0.000000 1.0 0.226244 5.0 1.131222 98.642534 1.357466 2.714932
chr19 4569722.0 4569723.0 3881.0 0.0 0.000000 3831.0 98.711672 5.0 0.128833 43.0 1.107962 98.711672 1.288328 2.576656
chr19 4569732.0 4569733.0 3979.0 3934.0 98.869063 3.0 0.075396 0.0 0.000000 41.0 1.030410 98.869063 1.130937 2.261875
chr19 4569741.0 4569742.0 4042.0 3980.0 98.466106 0.0 0.000000 0.0 0.000000 62.0 1.533894 98.466106 1.533894 3.067788

Graphs